Long-read Data Analysis Workshop¶
Sydney - 18th - 19th July 2017
Instructors¶
- Katherine Champ (KC) - Bioplatforms Australia, Sydney
- Tonia Russell (TR) - Ramaciotti Centre for Genomics, Sydney
- Anna Syme (AS) - Melbourne Bioinformatics, Melbourne
- Torsten Seemann (TS) - Melbourne Bioinformatics, Melbourne
- Nandan Deshpande - UNSW System Biology Initiative, Sydney
Timetable¶
Day 1¶
18th July - Room M020, The Red Centre, Kensington Campus, UNSW, Sydney
| Time | Topic | Links | Instructor |
|---|---|---|---|
| 9:00 | Welcome and registration | Workshop Host and KC | |
| 9:30 | Introduction to long-read sequencing (Lecture) | TS | |
| 10:30 | Break | ||
| 10:30 | Long-read data – Practical considerations (Lecture) | TR | |
| 11:30 | Introduction to Command-line (Practical) | ND | |
| 13:00 | Lunch | ||
| 14:00 | Introduction to NGS – Technology, data formats and quality control | ND | |
| 14:30 | Illumina de novo assembly (Velvet) (Practical) | ND | |
| 15:00 | Coffee break | ||
| 15:30 | Illumina de novo assembly (Velvet) (Practical) | ND | |
| 17:00 | Q&A | All |
Day 2¶
19th July - Room M020, The Red Centre, Kensington Campus, UNSW, Sydney
| Time | Topic | Links | Instructor |
|---|---|---|---|
| 9:00 | Long-read data – Quality control (Practical) | TR | |
| 10:30 | Coffee break | ||
| 11:00 | PacBio assembly + Illimuna polishing (Practical) | TS and AS | |
| 12:30 | Lunch | ||
| 13:30 | PacBio assembly + Illimuna polishing (Continue) (Practical) | TS and AS | |
| 15:00 | Break | ||
| 15:30 | Comparison of Illimuna and PacBio assembly | TS | |
| 16:45 | Q&A, wrap up (how to access course’s VM) & survey | All |